PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002436
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family LBD
Protein Properties Length: 336aa    MW: 37246.2 Da    PI: 6.499
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-31450PU_refplantGDBView CDS
gnl|UG|Pta#S20496618PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.32.4e-284102194
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                +C++C+vlr++C++ C+++p++      ++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+ G+vg++ ++++ql+q+++e 
  Pta002436   4 SCNGCRVLRKGCSETCIIRPCLqwiknEESQANATVFLAKFYGRAGLMNLISAGPEHLRPAIFKSLLYEACGRMVNPIFGSVGLLCSGNWQLCQAAVES 102
                6*********************9998767889***************************************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4833109IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-234101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSETCI IRPCLQWIKN EESQANATVF LAKFYGRAGL MNLISAGPEH  60
LRPAIFKSLL YEACGRMVNP IFGSVGLLCS GNWQLCQAAV ESILKGCPIH PILVDSSGTQ  120
MPTERSNTNP SVRSTLMETI TNELHKVKTK GRFKRRKSTV KDVSLNNSDA EDLGASQVFN  180
LRWRRCYPGE SQTPALEGIP NHLVSSDSSC ESLEHFDDLR NHKEADMEGH MSKAMDMGPV  240
NIKCCSDQND HKATMESVPE VSYTQAPDLE DMQAIKHEYE SISSDVTDVK LELTLSSQGS  300
ATHAAEKHHT NLHWNSCMEH SDEPTITYLG LGLTQA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.126870.0root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006842288.19e-82PREDICTED: LOB domain-containing protein 40
TrEMBLW1P7Q51e-81W1P7Q5_AMBTC; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.16e-68LOB domain-containing protein 40